#15942: ADS 23.1.0 SIGSEGVs with C [libglapi.so.0+0x19282] _glapi_add_dispatch+0x42 on Fedora 39 w/openjdk 11.0.22 2024-01-16

allenh reported 2024-04-17T23:01:27Z · last modified 2024-04-18T01:28:14Z

ADS 23.1.0 SIGSEGVs with C [libglapi.so.0+0x19282] _glapi_add_dispatch+0x42 on Fedora 39 w/openjdk 11.0.22 2024-01-16

Dev
QA

Priority	Critical
Complexity	Unknown

Component	Q Analyzer
Version	23.1

I upgraded from Fedora 38 w/OpenJDK 11.0.22 to Fedora 39 w/OpenJDK 11.0.22 and I am now getting SIGSEGVs when I try to run a query in Query Analyzer. ADS worked great without issues on Fedora 38 w/OpenJDK 11.0.22. ADS crashes soon after I hit run with a simple query:

select max(created_at) from dcv.estimates;

I am using the Java that comes with Fedora. I am using in-kernel graphics drivers (amdgpu), no NVIDIA drivers. Here's what I see in the GNOME Terminal:

WARNING: An illegal reflective access operation has occurred

WARNING: Illegal reflective access by com.intellij.util.ReflectionUtil (file:/opt/datastudio-23.1.0/lib/aqua-lib.jar) to field sun.awt.X11.XToolkit.awtAppClassName

WARNING: Please consider reporting this to the maintainers of com.intellij.util.ReflectionUtil

WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations

WARNING: All illegal access operations will be denied in a future release

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# A fatal error has been detected by the Java Runtime Environment:

# SIGSEGV (0xb) at pc=0x00007f7214e19282, pid=294824, tid=295105

# JRE version: OpenJDK Runtime Environment (Red_Hat-11.0.22.0.7-1) (11.0.22+7) (build 11.0.22+7)

# Java VM: OpenJDK 64-Bit Server VM (Red_Hat-11.0.22.0.7-1) (11.0.22+7, mixed mode, tiered, z gc, linux-amd64)

# Problematic frame:

# C [libglapi.so.0+0x19282] _glapi_add_dispatch+0x42

# Core dump will be written. Default location: Core dumps may be processed with "/usr/lib/systemd/systemd-coredump %P %u %g %s %t %c %h" (or dumping to /opt/datastudio-23.1.0/core.294824)

# An error report file with more information is saved as:

# /opt/datastudio-23.1.0/hs_err_pid294824.log

# If you would like to submit a bug report, please visit:

# https://bugzilla.redhat.com/enter_bug.cgi?product=Fedora&component=java-11-openjdk&version=38

# The crash happened outside the Java Virtual Machine in native code.

# See problematic frame for where to report the bug.

./datastudio.local.sh: line 49: 294824 Aborted (core dumped) java -Dsun.swing.enabledImprovedDragGesture -Djsse.enableCBCProtection=false -XX:+UnlockExperimentalVMOptions -XX:+UseZGC -Xmx16G -XX:MaxRAM=16g -XX:MetaspaceSize=512m -XX:InitialRAMPercentage=10.0 -XX:MaxRAMPercentage=80.0 -cp $CLASSES com.aquafold.datastudio.DataStudio

I can get the coredump file from ABRT if needed. I will upload the stack trace files.

/allen

2 attachments

hs_err_pid294824.log

2024-04-17T23:01:27Z

233 KB
datastudio.log

2024-04-17T23:01:27Z

212 KB

All Comments (4) Change History

allenh 2024-04-17T23:12:31Z

I don't think this crash is specific to running SQL queries in Query Analyzer. I can't get quite a few of the things in the Help menu to load/open. The Options preferences does work.

allenh 2024-04-17T23:27:05Z

I can't use ADS at this point. The server browser tree works. I tried turning off the bottom are of the Query Analyzer (where grid/text results are) and it still crashes. So I'm stuck.

allenh 2024-04-18T01:07:57Z · (edited)

I turned off "Charts" [1] and it worked.

I then re-enabled "Charts" [1]. I then replaced the libglapi.so.0 with a copy from the one included in Fedora 39 and it worked, but generated an error:

/datastudio.local.sh

WARNING: An illegal reflective access operation has occurred

WARNING: Illegal reflective access by com.intellij.util.ReflectionUtil (file:/opt/datastudio-23.1.0/lib/aqua-lib.jar) to field sun.awt.X11.XToolkit.awtAppClassName

WARNING: Please consider reporting this to the maintainers of com.intellij.util.ReflectionUtil

WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations

WARNING: All illegal access operations will be denied in a future release

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libGL error: MESA-LOADER: failed to open radeonsi: /usr/lib/x86_64-linux-gnu/dri/radeonsi_dri.so: cannot open shared object file: No such file or directory (search paths /usr/lib/x86_64-linux-gnu/dri, suffix _dri)

libGL error: failed to load driver: radeonsi

libGL error: MESA-LOADER: failed to open swrast: /usr/lib/x86_64-linux-gnu/dri/swrast_dri.so: cannot open shared object file: No such file or directory (search paths /usr/lib/x86_64-linux-gnu/dri, suffix _dri)

libGL error: failed to load driver: swrast

Caught handled GLException: X11GLXDrawableFactory - Could not initialize shared resources for X11GraphicsDevice[type .x11, connection :1, unitID 0, handle 0x0, owner false, ResourceToolkitLock[obj 0x5dcdade0, isOwner false, <3e8f6903, 35efbafc>[count 0, qsz 0, owner <NULL>]]] on thread AWT-EventQueue-0 IDEA 15.0.4#IC-143.SNAPSHOT IDEA, eap:true, os:Linux 6.8.6-200.fc39.x86_64, java-version:Red Hat, Inc. 11.0.22+7-SharedResourceRunner

[0]: jogamp.opengl.x11.glx.X11GLXDrawableFactory$SharedResourceImplementation.createSharedResource(X11GLXDrawableFactory.java:306)

[1]: jogamp.opengl.SharedResourceRunner.run(SharedResourceRunner.java:353)

[2]: java.base/java.lang.Thread.run(Thread.java:829)

Caused[0] by GLException: AWT-EventQueue-0 IDEA 15.0.4#IC-143.SNAPSHOT IDEA, eap:true, os:Linux 6.8.6-200.fc39.x86_64, java-version:Red Hat, Inc. 11.0.22+7-SharedResourceRunner: Unable to create temp OpenGL context(1) on thread AWT-EventQueue-0 IDEA 15.0.4#IC-143.SNAPSHOT IDEA, eap:true, os:Linux 6.8.6-200.fc39.x86_64, java-version:Red Hat, Inc. 11.0.22+7-SharedResourceRunner

[0]: jogamp.opengl.x11.glx.X11GLXContext.createImpl(X11GLXContext.java:390)

[1]: jogamp.opengl.GLContextImpl.makeCurrentWithinLock(GLContextImpl.java:793)

[2]: jogamp.opengl.GLContextImpl.makeCurrent(GLContextImpl.java:676)

[3]: jogamp.opengl.GLContextImpl.makeCurrent(GLContextImpl.java:614)

[4]: jogamp.opengl.x11.glx.X11GLXDrawableFactory$SharedResourceImplementation.createSharedResource(X11GLXDrawableFactory.java:277)

[5]: jogamp.opengl.SharedResourceRunner.run(SharedResourceRunner.java:353)

[6]: java.base/java.lang.Thread.run(Thread.java:829)

It looks like ADS needs to update it's libglapi library and perhaps the JOGL library.

/allen

1. https://www.aquaclusters.com/app/home/project/public/aquadatastudio/wikibook/Documentation23.1/page/136/Charts-and-OpenGL-or-JOGL-Configuration

I turned off "Charts" [1] and it worked.

I then re-enabled "Charts" [1]. I then replaced the libglapi.so.0 with a copy from the one included in Fedora 39 and it worked, but generated an error:

/datastudio.local.sh

WARNING: An illegal reflective access operation has occurred

WARNING: Illegal reflective access by com.intellij.util.ReflectionUtil (file:/opt/datastudio-23.1.0/lib/aqua-lib.jar) to field sun.awt.X11.XToolkit.awtAppClassName

WARNING: Please consider reporting this to the maintainers of com.intellij.util.ReflectionUtil

WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations

WARNING: All illegal access operations will be denied in a future release

icons/collapsible_pane_default.png

icons/collapsible_pane_mask.png

icons/collapsible_pane_gray.png

icons/collapsible_pane_mask.png

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libGL error: failed to load driver: radeonsi

libGL error: failed to load driver: swrast

[0]: jogamp.opengl.x11.glx.X11GLXDrawableFactory$SharedResourceImplementation.createSharedResource(X11GLXDrawableFactory.java:306)

[1]: jogamp.opengl.SharedResourceRunner.run(SharedResourceRunner.java:353)

[2]: java.base/java.lang.Thread.run(Thread.java:829)

[0]: jogamp.opengl.x11.glx.X11GLXContext.createImpl(X11GLXContext.java:390)

[1]: jogamp.opengl.GLContextImpl.makeCurrentWithinLock(GLContextImpl.java:793)

[2]: jogamp.opengl.GLContextImpl.makeCurrent(GLContextImpl.java:676)

[3]: jogamp.opengl.GLContextImpl.makeCurrent(GLContextImpl.java:614)

[4]: jogamp.opengl.x11.glx.X11GLXDrawableFactory$SharedResourceImplementation.createSharedResource(X11GLXDrawableFactory.java:277)

[5]: jogamp.opengl.SharedResourceRunner.run(SharedResourceRunner.java:353)

[6]: java.base/java.lang.Thread.run(Thread.java:829)

It looks like ADS needs to update it's libglapi library and perhaps the JOGL library.

/allen

1. https://www.aquaclusters.com/app/home/project/public/aquadatastudio/wikibook/Documentation23.1/page/136/Charts-and-OpenGL-or-JOGL-Configuration

allenh 2024-04-18T01:28:14Z

I was able to fix this error b/c for some reason I don't know, it's looking for the mesa drivers in the wrong place for Fedora (they are in /usr/lib64/dri and not /usr/lib/x86_64-linu-gnu/dri).

I did this:

sudo mkdir -p /usr/lib/x86_64-linux-gnu/

cd /usr/lib/x86_64-linux-gnu

sudo ln -s /usr/lib64/dri .

Then ADS isn't groaking any more errors or coredumps:

./datastudio-bundled.local.sh

WARNING: An illegal reflective access operation has occurred

WARNING: Illegal reflective access by com.intellij.util.ReflectionUtil (file:/opt/datastudio-23.1.0/lib/aqua-lib.jar) to field sun.awt.X11.XToolkit.awtAppClassName

WARNING: Please consider reporting this to the maintainers of com.intellij.util.ReflectionUtil

WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations

WARNING: All illegal access operations will be denied in a future release

icons/collapsible_pane_default.png

icons/collapsible_pane_mask.png

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Here's my Chart settings:
Support Charts: 🗹

Enable Anti-Aliasing: 🗹

Enable Background: 🗹

Offscreen Rendering: Default

Visual Analytics Offscreen Rendering: Default

Text Renderer: Default

/allen

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ADS 23.1.0 SIGSEGVs with C [libglapi.so.0+0x19282] _glapi_add_dispatch+0x42 on Fedora 39 w/openjdk 11.0.22 2024-01-16

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Issue #15942

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ADS 23.1.0 SIGSEGVs with C [libglapi.so.0+0x19282] _glapi_add_dispatch+0x42 on Fedora 39 w/openjdk 11.0.22 2024-01-16

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Issue #15942

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